[1] de Crom SC, Rossen JW, van Furth AM, et al. Enterovirus and parechovirus infection in children:a brief overview. Eur J Pediatr, 2016; 175, 1023-9. doi:  10.1007/s00431-016-2725-7
[2] He SZ, Chen MY, Xu XR, et al. Epidemics and aetiology of hand, foot and mouth disease in Xiamen, China, from 2008 to 2015. Epidemiol Infect, 2017; 145, 1865-74. doi:  10.1017/S0950268817000309
[3] Oberste, Steven M Pallansch, Mark A. Enterovirus molecular detection and typing. Reviews in Medical Microbiology, 2005; 16, 163-71. doi:  10.1097/01.revmedmi.0000184741.90926.35
[4] Montmayeur AM, Ng TF, Schmidt A, et al. High-Throughput Next-Generation Sequencing of Polioviruses. J Clin Microbiol, 2017; 55, 606-15. doi:  10.1128/JCM.02121-16
[5] Sanger F, Nicklen S, Coulson AR. DNA sequencing with chain-terminating inhibitors. 1977. Proceedings of the National Academy of Sciences of the United States of America, 1977; 74, 104-8.
[6] Goodwin S, McPherson JD, McCombie WR. Coming of age:ten years of next-generation sequencing technologies. Nat Rev Genet, 2016; 17, 333-51.
[7] Nakano K, Shiroma A, Shimoji M, et al. Advantages of genome sequencing by long-read sequencer using SMRT technology in medical area. Hum Cell, 2017; 30, 149-61. doi:  10.1007/s13577-017-0168-8
[8] Rhoads A, Au KF. PacBio Sequencing and Its Applications. Genomics Proteomics Bioinformatics, 2015; 13, 278-89. doi:  10.1016/j.gpb.2015.08.002
[9] Mikheyev AS, Tin MM. A first look at the Oxford Nanopore MinION sequencer. Mol Ecol Resour, 2014; 14, 1097-102. doi:  10.1111/men.2014.14.issue-6
[10] Feng Y, Zhang Y, Ying C, et al. Nanopore-based fourth-generation DNA sequencing technology. Genomics Proteomics Bioinformatics, 2015; 13, 4-16. doi:  10.1016/j.gpb.2015.01.009
[11] Cherukuri Y, Janga SC. Benchmarking of de novo assembly algorithms for Nanopore data reveals optimal performance of OLC approaches. BMC Genomics, 2016; 17 Suppl 7, 507. doi:  10.1186/s12864-016-2895-8
[12] Jain M, Koren S, Quick J, et al. Nanopore sequencing and assembly of a human genome with ultra-long reads. bioRxiv, 2017.
[13] Loman NJ, Quick J, Simpson JT. A complete bacterial genome assembled de novo using only nanopore sequencing data. Nat Methods, 2015; 12, 733-5. doi:  10.1038/nmeth.3444
[14] Goodwin S, Gurtowski J, Ethe-Sayers S, et al. Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome. Genome Res, 2015; 25, 1750-6. doi:  10.1101/gr.191395.115
[15] Ashton PM, Nair S, Dallman T, et al. MinION nanopore sequencing identifies the position and structure of a bacterial antibiotic resistance island. Nat Biotechnol, 2015; 33, 296-300.
[16] Wang J, Moore NE, Deng YM, et al. MinION nanopore sequencing of an influenza genome. Front Microbiol, 2015; 6, 766.
[17] Quick J, Loman NJ, Duraffour S, et al. Real-time, portable genome sequencing for Ebola surveillance. Nature, 2016; 530, 228-32. doi:  10.1038/nature16996
[18] Hoenen T, Groseth A, Rosenke K, et al. Nanopore Sequencing as a Rapidly Deployable Ebola Outbreak Tool. Emerg Infect Dis, 2016; 22, 331-4. https://wwwnc.cdc.gov/eid/article/22/2/15-1796_article
[19] Quick J, Grubaugh ND, Pullan ST, et al. Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples. Nat Protoc, 2017; 12, 1261-76. doi:  10.1038/nprot.2017.066
[20] Kilianski A, Haas JL, Corriveau EJ, et al. Bacterial and viral identification and differentiation by amplicon sequencing on the MinION nanopore sequencer. Gigascience, 2015; 4, 12. doi:  10.1186/s13742-015-0051-z
[21] Eckert SE, Chan JZ, Houniet D, et al. Enrichment by hybridisation of long DNA fragments for Nanopore sequencing. Microb Genom, 2016; 2, e000087.
[22] Karamitros T, Magiorkinis G. A novel method for the multiplexed target enrichment of MinION next generation sequencing libraries using PCR-generated baits. Nucleic Acids Res, 2015; 43, e152. doi:  10.1093/nar/gkv773
[23] Greninger AL, Naccache SN, Federman S, et al. Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis. Genome Med, 2015; 7, 99. doi:  10.1186/s13073-015-0220-9
[24] Batovska J, Lynch SE, Rodoni BC, et al. Metagenomic arbovirus detection using MinION nanopore sequencing. J Virol Methods, 2017; 249, 79-84. doi:  10.1016/j.jviromet.2017.08.019
[25] Li H, Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics, 2009; 25, 1754-60. doi:  10.1093/bioinformatics/btp324
[26] Li H, Handsaker B, Wysoker A, et al. The Sequence Alignment/Map format and SAMtools. Bioinformatics, 2009; 25, 2078-9. doi:  10.1093/bioinformatics/btp352
[27] Thorvaldsdottir H, Robinson JT, Mesirov JP. Integrative Genomics Viewer (IGV):high-performance genomics data visualization and exploration. Brief Bioinform, 2013; 14, 178-92. doi:  10.1093/bib/bbs017
[28] Quinlan AR, Hall I M. BEDTools:a flexible suite of utilities for comparing genomic features. Bioinformatics, 2010; 26, 841-2. doi:  10.1093/bioinformatics/btq033
[29] Lu H, Giordano F, Ning, Z. Oxford Nanopore MinION Sequencing and Genome Assembly. Genomics Proteomics Bioinformatics, 2016; 14, 265-79. doi:  10.1016/j.gpb.2016.05.004
[30] Imai K, Tarumoto N, Misawa K, et al. A novel diagnostic method for malaria using loop-mediated isothermal amplification (LAMP) and MinION nanopore sequencer. BMC Infect Dis, 2017; 17, 621. doi:  10.1186/s12879-017-2718-9
[31] Karamitros T, Harrison I, Piorkowska R, et al. De Novo Assembly of Human Herpes Virus Type 1 (HHV-1) Genome, Mining of Non-Canonical Structures and Detection of Novel Drug-Resistance Mutations Using Short-and Long-Read Next Generation Sequencing Technologies. PLoS One, 2016; 11, e0157600. doi:  10.1371/journal.pone.0157600
[32] Houldcroft CJ, Beale MA, Breuer J. Clinical and biological insights from viral genome sequencing. Nat Rev Microbiol, 2017; 15, 183-92. doi:  10.1038/nrmicro.2016.182
[33] Laver T, Harrison J, O'Neill PA, et al. Assessing the performance of the Oxford Nanopore Technologies MinION. Biomol Detect Quantif, 2015; 3, 1-8. doi:  10.1016/j.bdq.2015.02.001
[34] Johnson SS, Zaikova E, Goerlitz DS, et al. Real-Time DNA Sequencing in the Antarctic Dry Valleys Using the Oxford Nanopore Sequencer. J Biomol Tech, 2017; 28, 2-7. https://medium.com/neodotlife/nanopore-6443c81d76d3