[1] Hinson VK, Tyor WR. Update on viral encephalitis. Curr Opin Neurol, 2001; 14, 369−74. doi:  10.1097/00019052-200106000-00017
[2] Huang SS, Zhou WM, Wang MJ, et al. The disease burden of viral encephalitis in China between 1990 and 2019. New Med, 2022; 32, 241−9. (In Chinese
[3] Moon SM, Kim T, Lee EM, et al. Comparison of clinical manifestations, outcomes and cerebrospinal fluid findings between herpes simplex type 1 and type 2 central nervous system infections in adults. J Med Virol, 2014; 86, 1766−71. doi:  10.1002/jmv.23999
[4] Li XL, Gao XY, Fu SH, et al. An outbreak of Japanese encephalitis in adults in Northern China, 2013: a population-based study. Vector-Borne Zoonotic Dis, 2019; 19, 26−34. doi:  10.1089/vbz.2017.2251
[5] Wu D, Chen XJ, Liu WJ, et al. Emergence of Japanese encephalitis among adults 40 years of age or older in Northern China: epidemiological and clinical characteristics. Transbound Emerg Dis, 2021; 68, 3415−23. doi:  10.1111/tbed.13945
[6] Zhang YP, Lei WW, Wang YL, et al. Surveillance of west Nile virus infection in Kashgar Region, Xinjiang, China, 2013-2016. Sci Rep, 2021; 11, 14010. doi:  10.1038/s41598-021-93309-2
[7] Rhoades RE, Tabor-Godwin JM, Tsueng G, et al. Enterovirus infections of the central nervous system. Virology, 2011; 411, 288−305. doi:  10.1016/j.virol.2010.12.014
[8] Zhang CR, Xie FJ, Jiang JX. Research advances on hand foot and mouth disease complicated with central nervous system damage. Chin J New Clin Med, 2011; 4, 674−7. (In Chinese
[9] Wang X, Tian YL, Jiang HB, et al. Analysis on pathogeny and clinical of encephalitis and meningitis syndrome in children. Chin J Appl Clin Pediatr, 2019; 34, 926−9. (In Chinese
[10] Guan HY, Wang CR, Liu LZ, et al. Epidemiological survey and rapid etiological identification of an clustered viral encephalitis in Jinan, 2014. Chin J Appl Clin Pediatr, 2015; 30, 769−71. (In Chinese
[11] Perlejewski K, Bukowska-Ośko I, Rydzanicz M, et al. Next-generation sequencing in the diagnosis of viral encephalitis: sensitivity and clinical limitations. Sci Rep, 2020; 10, 16173. doi:  10.1038/s41598-020-73156-3
[12] Kafetzopoulou LE, Efthymiadis K, Lewandowski K, et al. Assessment of metagenomic Nanopore and Illumina sequencing for recovering whole genome sequences of chikungunya and dengue viruses directly from clinical samples. Euro Surveill, 2018; 23, 1800228.
[13] Deng XD, Achari A, Federman S, et al. Metagenomic sequencing with spiked primer enrichment for viral diagnostics and genomic surveillance. Nat Microbiol, 2020; 5, 443−54. doi:  10.1038/s41564-019-0637-9
[14] Durzyńska J, Pacholska-Bogalska J, Kaczmarek M, et al. Multiplex PCR for identification of herpes virus infections in adolescents. J Med Virol, 2011; 83, 267−71. doi:  10.1002/jmv.21972
[15] Xu ST, Chen MK, Zheng HY, et al. Nationwide distribution of varicella-zoster virus clades in China. BMC Infect Dis, 2016; 16, 542. doi:  10.1186/s12879-016-1863-x
[16] Wang HY, Takasaki T, Fu SH, et al. Molecular epidemiological analysis of Japanese encephalitis virus in China. J Gen Virol, 2007; 88, 885−94. doi:  10.1099/vir.0.82185-0
[17] Zhang JS, Zhang PH, Zuo SQ, et al. Establishment and preliminary use of the RT-PCR technique for the detection of west Nile virus. Chin J Zoonoses, 2004; 20, 737−40. (In Chinese
[18] Cui AL, Zhu Z, Wang CY, et al. Genetic characteristics of mumps virus in China from 2006 to 2008. Chin J Vaccines Immu, 2009; 15, 8−13. (In Chinese
[19] Stahl JP, Azouvi P, Bruneel F, et al. Guidelines on the management of infectious encephalitis in adults. Med Mal Infect, 2017; 47, 179−94. doi:  10.1016/j.medmal.2017.01.005
[20] Zanella MC, Lenggenhager L, Schrenzel J, et al. High-throughput sequencing for the aetiologic identification of viral encephalitis, meningoencephalitis, and meningitis. A narrative review and clinical appraisal. Clin Microbiol Infect, 2019; 25, 422−30. doi:  10.1016/j.cmi.2018.12.022
[21] Carbo EC, Buddingh EP, Karelioti E, et al. Improved diagnosis of viral encephalitis in adult and pediatric hematological patients using viral metagenomics. J Clin Virol, 2020; 130, 104566. doi:  10.1016/j.jcv.2020.104566
[22] Schibler M, Brito F, Zanella MC, et al. Viral sequences detection by high-throughput sequencing in cerebrospinal fluid of individuals with and without central nervous system disease. Genes (Basel), 2019; 10, 625. doi:  10.3390/genes10080625
[23] Leon KE, Schubert RD, Casas-Alba D, et al. Genomic and serologic characterization of enterovirus A71 brainstem encephalitis. Neurol Neuroimmunol Neuroinflamm, 2020; 7, e703. doi:  10.1212/NXI.0000000000000703
[24] Wang L, Chen F, You DP, et al. Development and validation of a multiplex-PCR based assay for the detection of 18 pathogens in the cerebrospinal fluid of hospitalized children with viral encephalitis. J Virol Methods, 2020; 277, 113804. doi:  10.1016/j.jviromet.2019.113804
[25] Paden CR, Tao Y, Queen K, et al. Rapid, sensitive, full-genome sequencing of severe acute respiratory syndrome coronavirus 2. Emerg Infect Dis, 2020; 26, 2401−5. doi:  10.3201/eid2610.201800
[26] Zhang LL, Zhang C, Peng JP. Application of nanopore sequencing technology in the clinical diagnosis of infectious diseases. Biomed Environ Sci, 2022; 35, 381−92.