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V. parahaemolyticus strain RIMD2210633 was used as the WT [21]. Non-polar hns deletion mutant (Δhns) and complementary Δhns (C-Δhns) were constructed in our previous study [17]. Control strains were also constructed by transferring the empty pBAD33 into the WT and Δhns strains to counteract the effects of arabinose and chloramphenicol on the results [17]. Table 1 lists all the primers used in the current study.
Table 1. Oligonucleotide primers used in this study
Target Primers (forward/reverse, 5'–3') Reference Protein expression hns AGCGGGATCCATGTCAGAGCTGACTAAAACAC/AGCGAAGCTTTTAGATTAGGAAATCGTCTAG [17] qPCR scrA CACACCACGAACACATTGC/TCAATAGCGTCACGGAATGC [9] scrG AAGCCGTGGTGGAAGAAGG/GCGTGTTGAGTGCGTTGG VP0117 GACCACCTCAATAGTTATCTG/TAAGTAGGCTTGGACATCTC VPA0198 GCATCAGAATCAGCAAGAC/ATGCTTAGCTCCTCTTCTTC VPA1176 GCCATATTCCAAACTCGTTGTG/TGCGTAAGCCAAGTTGATGAG VP0699 CTGACACATCGTGATACTTC/TTGATGTTGCAGCTCTTG VP2979 GCAACTCTCAAGTCATCATC/CAACAACCGTCTTCTATGG LacZ fusion scrA GCGCGTCGACCATCAAGCCATTTTATGAAAC/GCGCGAATTCGTCGGCTGCGATTAGTCTG [9] scrG GCGCGTCGACTAGCACGCTTGTGTTGGAC/GCGCGAATTCCAGGGAAATGAAGTAATCATGC VP0117 GCGCTCTAGACTCACACAACACTTTCTG/GCGCGAATTCAGACAATCACACCGATAG VPA0198 GCGCGTCGACCTCTGGTTCATTGTCTTG/GCGCGAATTCGTCTTGCTGATTCTGATG VPA1176 AAAGTCGACTCAGGTACGCTTGCTTCAC/GGGGAATTCCGTTGCTTGGTAGTGGTAATAG VP0699 GCGCGTCGACGGAGAATACCTAGCAGAG/GCGCGAATTCAGTATCACGATGTGTCAG VP2979 GCGCTCTAGATTTCTATCCGTTGGCTAC/GCGCGAATTCCTGACTTACATCGTGGAC EMSA scrA GAGCGTATATCCAAGTGGTTTG/GTCGGCTGCGATTAGTCTG [9] scrG TAGCACGCTTGTGTTGGAC/CAGGGAAATGAAGTAATCATGC VP0117 CTCACACAACACTTTCTG/GCGCGAATTCAGACAATCACACCGATAG VPA0198 CTCTGGTTCATTGTCTTG/GTCTTGCTGATTCTGATG VPA1176 TCAGGTACGCTTGCTTCAC/CGTTGCTTGGTAGTGGTAATAG VP0699 GGAGAATACCTAGCAGAG/AGTATCACGATGTGTCAG VP2979 TTTCTATCCGTTGGCTAC/CTGACTTACATCGTGGAC 16S rDNA GACACGGTCCAGACTCCTAC/GGTGCTTCTTCTGTCGCTAAC Note. EMSA: electrophoretic mobility shift assay. -
The V. parahaemolyticus strains were similarly cultured as described previously [9]. Briefly, V. parahaemolyticus was cultivated overnight (about 12 h) in 2.5% (w/v) Bacto heart infusion (HI) broth (BD Biosciences, USA) at 37 °C with shaking at 200 rpm. The resultant cultures were diluted 40-fold into the phosphate-buffered saline buffer (PBS, pH 7.2). Then, 150 µL of the diluted cultures were spread onto the HI plate with a diameter of 5 cm. After incubation at 37 °C for 6 h, the bacterial cells were harvested by adding 2 mL pre-cold PBS. When necessary, the media were supplemented with 100 µg/mL gentamicin, 5 µg/mL chloramphenicol, or 0.1% arabinose.
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The CV staining was carried out as previously described [9, 10]. Briefly, overnight cell cultures were diluted 50-fold into 5 mL fresh HI broth and cultured at 37 °C with shaking at 200 rpm and OD600 of approximately 1.4. Thereafter, the resultant cultures were 50-fold diluted into 2 mL fresh Difco marine (M) broth 2216 (BD Biosciences, USA) containing 0.1% arabinose and 5 µg/mL chloramphenicol in glass tubes and cultured at 30 °C with shaking at 150 rpm for 48 h. Media with planktonic cells were collected for the measurement of OD600 values. The surface-attached cells were stained with 0.1% CV. The bound CV was dissolved with 20% ethanol, and the OD570 values were measured. The relative biofilm formation was calculated with the formula: 100 × OD570/OD600.
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The intracellular c-di-GMP levels were measured similarly as previously described [22]. Briefly, V. parahaemolyticus was grown on HI plates at 37 °C for 6 h, and the bacterial cells were harvested by adding 2 mL pre-chilled PBS. Two OD600 bacterial suspensions were centrifuged at 10,000 ×g for 3 min at 4 °C. The cell pellet was washed twice with ice-cold PBS, resuspended in 2 mL ice-cold PBS, and then sonicated for 30 min (power 100%, frequency 37 kHz) in an ice-water bath. After centrifugation at 10,000 ×g for 10 min at 4 °C, the supernatant containing extracted c-di-GMP was collected to determine the intracellular c-di-GMP concentration with a c-di-GMP enzyme-linked immunosorbent assay kit (Mskbio, Beijing, China). Total proteins in the cell extracts were also determined by a Micro BCA Protein Assay Kit (ThermoFisher Scientific, USA), in accordance with the manufacturer’s instructions. The intracellular c-di-GMP concentration was expressed as pmol/mg of protein.
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The qPCR assay was performed as previously described [23]. Briefly, the total RNAs were extracted from the WT and Δhns strains, and the cDNAs were generated from 1 µg total RNAs using the FastKing First-Strand cDNA Synthesis Kit (Tiangen Biotech, Beijing, China) following the manufacturer’s instructions. The relative mRNA levels of each target gene were determined using the classic 2−ΔΔCt method.
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The promoter–proximal DNA region of each target gene was amplified and cloned into the pHRP309 vector containing a promoterless lacZ gene and a gentamicin resistance gene [24]. After verification by DNA sequencing, the recombinant pHRP309 was transferred to the WT and Δhns strains, respectively. Thereafter, the transformants were cultured and lysed to measure the β-galactosidase activity in the cell extracts using the β-Galactosidase Enzyme Assay System (Promega, USA), in accordance with the manufacturer’s instructions.
The two-plasmid reporter assay in E. coli was performed as previously described [25]. Briefly, the E. coli 100 λpir (Epicenter) bearing the indicated hns expression plasmid pBAD33-hns or the empty pBAD33 vector and a recombinant lacZ plasmid was cultivated overnight in Luria–Bertani (LB) broth at 37 °C with shaking at 200 rpm. The overnight cultures were diluted 1:100 into 5 mL fresh LB broth containing 0.1% arabinose and 20 µg/mL chloramphenicol and incubated at 37 °C with shaking at 200 rpm to reach an OD600 value of about 1.2. The E. coli cells were harvested and lysed to measure the β-galactosidase activity in the cell extracts.
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The coding region of hns was amplified and cloned into the pET28a vector (Novagen, USA) and then transferred to E. coli BL21λDE3 to express 6 × His-tagged H-NS (His-H-NS). The expression and purification of His-H-NS were performed as previously described [17]. The dialyzed His-H-NS was concentrated to a final concentration of 1.4 mg/mL. EMSA was performed exactly as previously described [26]. The results of EMSA were detected by ethidium bromide (EB) staining, and the gel images were displayed with an ultraviolet (UV) transilluminator.
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The EMSA was performed at least twice with similar results. The CV staining, c-di-GMP quantification, LacZ fusion, and qPCR were performed at least thrice with three replications each, with values expressed as the means ± standard deviation (SD). Analysis of variance with the Tukey-Kramer test was applied to calculate statistical significance, with P < 0.01 considered significant.
doi: 10.3967/bes2022.106
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Abstract:
Objective This study aimed to investigate the regulation of histone-like nucleoid structuring protein (H-NS) on biofilm formation and cyclic diguanylate (c-di-GMP) synthesis in Vibrio parahaemolyticus RIMD2210633. Methods Regulatory mechanisms were analyzed by the combined utilization of crystal violet staining, quantification of c-di-GMP, quantitative real-time polymerase chain reaction, LacZ fusion, and electrophoretic-mobility shift assay. Results The deletion of hns enhanced the biofilm formation and intracellular c-di-GMP levels in V. parahaemolyticus RIMD2210633. H-NS can bind the upstream promoter–proximal DNA regions of scrA, scrG, VP0117, VPA0198, VPA1176, VP0699, and VP2979 to repress their transcription. These genes encode a group of proteins with GGDEF and/or EAL domains associated with c-di-GMP metabolism. Conclusion One of the mechanisms by which H-NS represses the biofilm formation by V. parahaemolyticus RIMD2210633 may be via repression of the production of intracellular c-di-GMP. -
Key words:
- Vibrio parahaemolyticus /
- Biofilm /
- H-NS /
- C-di-GMP
注释: -
Figure 3. H-NS repressed the transcription of the seven genes associated with c-di-GMP metabolism in V. parahaemolyticus. The negative and positive numbers indicate the nucleotide positions upstream and downstream of indicated genes, respectively. (A) qPCR. After incubation at 37 °C for 6 h on HI plates, the bacterial cells were harvested, and total RNA was extracted using TRIzol Reagent. qPCR assay was used to determine the relative mRNA levels for target genes in Δhns and WT using the classical 2−ΔΔCt method. (B) LacZ fusion. The promoter DNA region of each target gene was cloned into the pHRP309 and then transferred into Δhns and WT to test the promoter activity in cellular extracts.
Figure 4. Two-plasmid reporter assay in E. coli. The E. coli 100λpir containing the pBAD33 plasmid or recombinant pBAD33-hns plasmid and a LacZ fusion reporter plasmid were grown in LB broth containing 0.2% arabinose until the mid-log phase (OD600 = 1.2). The bacterial cells were collected and assayed for lacZ expression using the β-galactosidase assay. The negative and positive numbers indicate the nucleotide positions upstream and downstream of indicated genes, respectively.
Figure 5. Binding of His-H-NS to the target DNA fragments. The regulatory DNA region of each target gene was incubated with increased amounts of His-H-NS and then subjected to 6% (w/v) polyacrylamide gel electrophoresis. The results were detected by EB staining and a UV transilluminator. A schematic representation of the EMSA design is shown below. The negative and positive numbers denote the nucleotide positions upstream and downstream of indicated genes, respectively.
Table 1. Oligonucleotide primers used in this study
Target Primers (forward/reverse, 5'–3') Reference Protein expression hns AGCGGGATCCATGTCAGAGCTGACTAAAACAC/AGCGAAGCTTTTAGATTAGGAAATCGTCTAG [17] qPCR scrA CACACCACGAACACATTGC/TCAATAGCGTCACGGAATGC [9] scrG AAGCCGTGGTGGAAGAAGG/GCGTGTTGAGTGCGTTGG VP0117 GACCACCTCAATAGTTATCTG/TAAGTAGGCTTGGACATCTC VPA0198 GCATCAGAATCAGCAAGAC/ATGCTTAGCTCCTCTTCTTC VPA1176 GCCATATTCCAAACTCGTTGTG/TGCGTAAGCCAAGTTGATGAG VP0699 CTGACACATCGTGATACTTC/TTGATGTTGCAGCTCTTG VP2979 GCAACTCTCAAGTCATCATC/CAACAACCGTCTTCTATGG LacZ fusion scrA GCGCGTCGACCATCAAGCCATTTTATGAAAC/GCGCGAATTCGTCGGCTGCGATTAGTCTG [9] scrG GCGCGTCGACTAGCACGCTTGTGTTGGAC/GCGCGAATTCCAGGGAAATGAAGTAATCATGC VP0117 GCGCTCTAGACTCACACAACACTTTCTG/GCGCGAATTCAGACAATCACACCGATAG VPA0198 GCGCGTCGACCTCTGGTTCATTGTCTTG/GCGCGAATTCGTCTTGCTGATTCTGATG VPA1176 AAAGTCGACTCAGGTACGCTTGCTTCAC/GGGGAATTCCGTTGCTTGGTAGTGGTAATAG VP0699 GCGCGTCGACGGAGAATACCTAGCAGAG/GCGCGAATTCAGTATCACGATGTGTCAG VP2979 GCGCTCTAGATTTCTATCCGTTGGCTAC/GCGCGAATTCCTGACTTACATCGTGGAC EMSA scrA GAGCGTATATCCAAGTGGTTTG/GTCGGCTGCGATTAGTCTG [9] scrG TAGCACGCTTGTGTTGGAC/CAGGGAAATGAAGTAATCATGC VP0117 CTCACACAACACTTTCTG/GCGCGAATTCAGACAATCACACCGATAG VPA0198 CTCTGGTTCATTGTCTTG/GTCTTGCTGATTCTGATG VPA1176 TCAGGTACGCTTGCTTCAC/CGTTGCTTGGTAGTGGTAATAG VP0699 GGAGAATACCTAGCAGAG/AGTATCACGATGTGTCAG VP2979 TTTCTATCCGTTGGCTAC/CTGACTTACATCGTGGAC 16S rDNA GACACGGTCCAGACTCCTAC/GGTGCTTCTTCTGTCGCTAAC Note. EMSA: electrophoretic mobility shift assay. -
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